Function reference • nybem

Habitat Models

New York Bight Ecological Model Habitat Models

nybem_submodels: NYBEM Submodels

Calculate Habitat Suitability Index Values

Computes suitability indices given a set of suitability curves and project-specific inputs.

SIcalc(): Calculate Suitability Indices

Calculate Habitat Suitability Index (HSI)

Calculates the habitat suitability index for the input suitability indices.

HSIcalc(): Calculate Habitat Suitability Index (HSI)

Visualization

Helps display habitat suitability model data

HSIplotter(): Plots habitat suitability index curves

raster_fig(): Create a Raster Figure

model_summary(): Summarize HSI Models

summary_table(): HSI Model Summary Table.

feature_model_barplot(): Create a Feature By Ecological Model Barplot

Summarization

Summarize the habitat models for a study area

summarize_by_poly(): Summarize Raster by Polygon

summarize_models(): Summarize HSI Models by Polygons

Habitat Zonation

Delineates habitat zones from input raster datasets.

set_habitat_zone(): Set Habitat Zone

set_salinity_zone(): Set Salinity Zone

set_tidal_zone(): Create a Tidal Zone Raster

Utility Functions

Useful function to help get things done.

ifelse(): Raster Con Function

is_RasterLayer(): Test if RasterLayer

is_cat_raster(): Is Catagorical Raster?

write_cat_tiff(): Write Categorical Raster TIFF file

write_cont_tiff(): Write Continuous Raster TIFF file

has_colortable(): Has Colortable?

are_colors(): Are Colors?

name_model(): Name Raster HSI Model

na_outside_model(): Set NA Outside Modeled Area

recode_models(): Recode HSI Models.

save_raster_rdata(): Save raster to RData file